PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25517.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 139aa    MW: 15374 Da    PI: 6.3398
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25517.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.38.9e-471313658189
       GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskee 157
                s+ +k+++p + +   s e+l+++++ ++++P++kf+h+taNqaI ea+e+e+rvH+iD+di qG QWpa++qaL++R++g+p lRiTgvgs    s ++
  PK25517.1  13 SNSSKSFNPFPPN---SLEVLKIYQIVYQACPYIKFAHFTANQAIFEAFETESRVHVIDLDILQGYQWPAFMQALSARSGGSPFLRITGVGS----SIDS 105
                4445555555555...99**************************************************************************....9*** PP

       GRAS 158 leetgerLakfAeelgvpfefnvlvakrledl 189
                ++etg+ L+++A++l+vpfef++ v ++le l
  PK25517.1 106 VRETGRCLTELAHSLQVPFEFHA-VGEQLEHL 136
                ***********************.68888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.1891139IPR005202Transcription factor GRAS
PfamPF035143.1E-4413136IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
AATPTTTTTT TSSNSSKSFN PFPPNSLEVL KIYQIVYQAC PYIKFAHFTA NQAIFEAFET  60
ESRVHVIDLD ILQGYQWPAF MQALSARSGG SPFLRITGVG SSIDSVRETG RCLTELAHSL  120
QVPFEFHAVG EQLEHLRSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-202612673180GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045749.19e-74PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0A0LSZ63e-73A0A0A0LSZ6_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s33360.13e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-33GRAS family protein